I encountered an error creating a conda envrionment when following single cell best practices tutorial available at:
https://www.sc-best-practices.org/introduction/raw_data_processing.html#a-real-world-example
Below is the issue:
conda create -n af_xmpl -y -c bioconda python=3.9 salmon alevin-fry pyroe Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed UnsatisfiableError: The following specifications were found to be incompatible with each other: Output in format: Requested package -> Available versions
conda update --all --yes conda config --set channel_priority flexible conda config --set channel_priority false
conda create -n af_xmpl
conda activate af_xmpl conda install -c bioconda python=3.9 salmon alevin-fry pyroe
conda create -n af_xmpl
conda activate af_xmpl
conda install -c conda-forge -c bioconda python=3.9 salmon alevin-fry pyroe
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