Wednesday, January 10, 2018

Coloring specific tips labels of phylogenetic tree in R

Some time ago, I wanted to change colors of specific branches and tips labels in a phylogenetic tree. I have R programming for changing colors. I have posted a screenshot of what I did.




Tuesday, January 9, 2018

Converting FastQ to FastA - comparison of one-liners and toolkits

Just out of curiosity, was checking time it takes to convert fastq to fasta by different tools and one-liners. I took the commands/one-liners from this biostar post.

The input file is gz file and contains 6 M reads of 301 bp.