$ time parallel "echo {} && cat {} | wc -l | awk '{d=\$1; print d/4;}'" ::: 500bp_insert*.fastq
500bp_insert_lane1_2_read2PE_single_appended.Genome.completely.cleaned.fastq_ORPHAN.fastq
408600
500bp_insert_lane1_2_read1PE_single_appended.Genome.completely.cleaned.fastq_ORPHAN.fastq
2668085
500bp_insert_lane1_2_read2PE_single_appended.Genome.completely.cleaned.fastq_matched.fastq
148713855
500bp_insert_lane1_2_read1PE_single_appended.Genome.completely.cleaned.fastq_matched.fastq
148713855
real 0m19.850s user 0m13.144s sys 0m56.604s
But the zipped files of size around ~ 23 Gb took a bit of around ~5 min.
$time parallel "echo {} && gunzip -c {} | wc -l | awk '{d=\$1; print d/4;}'" ::: 500bp_insert_lane*_read1.fastq.gz
500bp_insert_lane1_read1.fastq.gz
75640549
500bp_insert_lane2_read1.fastq.gz
76849862
real 2m40.358s user 5m6.051s sys 0m24.710s
$ time parallel "echo {} && gunzip -c {} | wc -l | awk '{d=\$1; print d/4;}'" ::: 500bp_insert_lane*_read2.fastq.gz
500bp_insert_lane2_read2.fastq.gz
76849862
500bp_insert_lane1_read2.fastq.gz
75640549
real 2m49.668s user 5m17.894s sys 0m28.807s
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