Monday, August 8, 2022

Difference between PCA and PCoA

 PCA and PCoA are really similar. In fact, PCA is just a type of PCoA that uses euclidean distances! So we could say:

Type of Ordination: - MDS - CCA - PCoA - PCoA of Jaccard distances - PCoA of Bray-Curtis dissimilarities - PCoA of Euclidian distances (this is also called PCA) - PCoA of UniFrac distances
source: https://forum.qiime2.org/t/pca-vs-pcoa-which-is-the-appropriate-one-for-microbiome-data/5974/2

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