Useful conda commands list

List the conda environments

conda info --envs

Create a conda environment

conda create --name PlasClass

Activate a conda environment

conda activate PlasClass

Install a package in conda environment

conda install -c bioconda plasclass

Install multiple packages of specific version while creating a conda environment

conda create -n PlasClass python=3.7 scikit-learn=0.21.3 plasclass

Install specific version of package in a conda environment

conda install spades=3.9.0

Search for the package versions available to install in a conda environment

conda search spades

Remove an environment

conda env remove -n PlasClass

Export 

conda env export > singlecell_env.yml

install using yml file

working with mamba  fast installations

useful tips

Difference between PCA and PCoA

 PCA and PCoA are really similar. In fact, PCA is just a type of PCoA that uses euclidean distances! So we could say:

Type of Ordination:
- MDS
- CCA
- PCoA
  - PCoA of Jaccard distances
  - PCoA of Bray-Curtis dissimilarities
  - PCoA of Euclidian distances (this is also called PCA)
  - PCoA of UniFrac distances
source: https://forum.qiime2.org/t/pca-vs-pcoa-which-is-the-appropriate-one-for-microbiome-data/5974/2