Installing nanopack

$ pip install nanopack

Collecting nanopack

Collecting nanoplotter>=0.16.5 (from nanopack)

Collecting NanoPlot>=0.20.1 (from nanopack)

Collecting NanoLyse>=0.2.1 (from nanopack)

Collecting NanoFilt>=1.5.2 (from nanopack)

Collecting nanomath>=0.13.3 (from nanopack)

Collecting nanoget>=0.15.0 (from nanopack)

Collecting NanoStat>=0.6.1 (from nanopack)

Collecting numpy (from nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/e0/b5/63b79fe426433fa1cd110eb04a94ec0c6967e56e5f57c98caf455a5fb6e2/numpy-1.16.1-cp27-cp27mu-manylinux1_x86_64.whl

Collecting seaborn (from nanoplotter>=0.16.5->nanopack)

Collecting pauvre (from nanoplotter>=0.16.5->nanopack)

Collecting pandas (from nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/c5/88/b8659eecde0350d37d5b47c1c2a88f39e6153e5809bcfc48bb7fde6f231b/pandas-0.24.1-cp27-cp27mu-manylinux1_x86_64.whl

Collecting matplotlib>=2.0.0 (from nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl

Collecting scipy (from nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/81/39/f1457091d0a45a84a2bd7815e2cf6bd45d4fe240728e9ed567cbb17c8abe/scipy-1.2.1-cp27-cp27mu-manylinux1_x86_64.whl

Collecting biopython (from NanoPlot>=0.20.1->nanopack)

  Using cached https://files.pythonhosted.org/packages/19/4e/ac487da685e947c56fafd10b2a04c6a09f0051c2e7665a873263f5e303f2/biopython-1.73-cp27-cp27mu-manylinux1_x86_64.whl

Collecting pysam>0.10.0.0 (from NanoPlot>=0.20.1->nanopack)

  Using cached https://files.pythonhosted.org/packages/0f/bd/f5ab828a9ff45a6ca14d5ea2a3580f720134052db258cd7ef929a4ed1d7a/pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl

Collecting python-dateutil (from NanoPlot>=0.20.1->nanopack)

  Using cached https://files.pythonhosted.org/packages/41/17/c62faccbfbd163c7f57f3844689e3a78bae1f403648a6afb1d0866d87fbb/python_dateutil-2.8.0-py2.py3-none-any.whl

Collecting mappy>=2.2 (from NanoLyse>=0.2.1->nanopack)

Collecting pytz>=2011k (from pandas->nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/61/28/1d3920e4d1d50b19bc5d24398a7cd85cc7b9a75a490570d5a30c57622d34/pytz-2018.9-py2.py3-none-any.whl

Collecting cycler>=0.10 (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl

Collecting backports.functools-lru-cache (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl

Collecting subprocess32 (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

Collecting kiwisolver>=1.0.1 (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl

Collecting six>=1.10 (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl

Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/de/0a/001be530836743d8be6c2d85069f46fecf84ac6c18c7f5fb8125ee11d854/pyparsing-2.3.1-py2.py3-none-any.whl

Collecting setuptools (from kiwisolver>=1.0.1->matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Using cached https://files.pythonhosted.org/packages/d1/6a/4b2fcefd2ea0868810e92d519dacac1ddc64a2e53ba9e3422c3b62b378a6/setuptools-40.8.0-py2.py3-none-any.whl

Installing collected packages: numpy, pytz, six, python-dateutil, pandas, scipy, cycler, backports.functools-lru-cache, subprocess32, setuptools, kiwisolver, pyparsing, matplotlib, seaborn, biopython, pauvre, nanoplotter, pysam, nanomath, nanoget, NanoPlot, mappy, NanoLyse, NanoFilt, NanoStat, nanopack

Successfully installed NanoFilt-2.0.0 NanoLyse-0.5.0 NanoPlot-1.8.1 NanoStat-0.8.0 backports.functools-lru-cache-1.5 biopython-1.73 cycler-0.10.0 kiwisolver-1.0.1 mappy-2.15 matplotlib-2.2.3 nanoget-1.2.0 nanomath-0.15.1 nanopack-0.1.4 nanoplotter-0.28.0 numpy-1.16.1 pandas-0.24.1 pauvre-0.1.86 pyparsing-2.3.1 pysam-0.15.2 python-dateutil-2.8.0 pytz-2018.9 scipy-1.2.1 seaborn-0.9.0 setuptools-40.8.0 six-1.12.0 subprocess32-3.5.3


$ NanoPlot

NanoPlot: command not found


$ pip install nanopack

Collecting nanopack

  Downloading https://files.pythonhosted.org/packages/3b/cc/52bdfaa3fb739d6fc26ac9ec55cd63d7db06d73bf0d7d096b37b7b2839bf/nanopack-0.1.4.tar.gz

Collecting NanoPlot>=0.20.1 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/d6/9e/992d05d1e8a72a3de6dd945a6c2fab64ddae0b95657b3263809a4c125ecb/NanoPlot-1.8.1.tar.gz

Collecting NanoStat>=0.6.1 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/5f/58/6555371d9c6fe42c67e64bcf1a4e2a25d237f086292f696a814c12149a68/NanoStat-0.8.0.tar.gz

Collecting NanoFilt>=1.5.2 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/b9/96/6e9025334a704d64140e8d7fc664c0a11e3e98ba16d109ea12dc6ca2d067/NanoFilt-2.0.0.tar.gz

Collecting NanoLyse>=0.2.1 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/37/ec/3ce7573f77a341040f77de0988594d2229522b8a52384f7a29aecf7082b2/NanoLyse-0.5.0.tar.gz

Collecting nanoget>=0.15.0 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/b0/a4/d925390225969242be5e1ff8e019372a3831b3cd71870164c4c95b243449/nanoget-1.2.0.tar.gz

Collecting nanomath>=0.13.3 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/6d/cd/b6ea00834b31c20de01fdaaea334e87bbba04ec47222f6f17d06a47b06d2/nanomath-0.15.1.tar.gz

Collecting nanoplotter>=0.16.5 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/3e/6c/1e0ec0d9eb36ad6ebca1f9be2a388e620c91279987a15a42ad4b2756cd5f/nanoplotter-0.28.0.tar.gz

Collecting biopython (from NanoPlot>=0.20.1->nanopack)

  Downloading https://files.pythonhosted.org/packages/19/4e/ac487da685e947c56fafd10b2a04c6a09f0051c2e7665a873263f5e303f2/biopython-1.73-cp27-cp27mu-manylinux1_x86_64.whl (2.2MB)

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Collecting pysam>0.10.0.0 (from NanoPlot>=0.20.1->nanopack)

  Downloading https://files.pythonhosted.org/packages/0f/bd/f5ab828a9ff45a6ca14d5ea2a3580f720134052db258cd7ef929a4ed1d7a/pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl (8.9MB)

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Collecting pandas (from NanoPlot>=0.20.1->nanopack)

  Downloading https://files.pythonhosted.org/packages/c5/88/b8659eecde0350d37d5b47c1c2a88f39e6153e5809bcfc48bb7fde6f231b/pandas-0.24.1-cp27-cp27mu-manylinux1_x86_64.whl (10.1MB)

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Collecting numpy (from NanoPlot>=0.20.1->nanopack)

  Downloading https://files.pythonhosted.org/packages/e0/b5/63b79fe426433fa1cd110eb04a94ec0c6967e56e5f57c98caf455a5fb6e2/numpy-1.16.1-cp27-cp27mu-manylinux1_x86_64.whl (17.0MB)

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Collecting scipy (from NanoPlot>=0.20.1->nanopack)

  Downloading https://files.pythonhosted.org/packages/81/39/f1457091d0a45a84a2bd7815e2cf6bd45d4fe240728e9ed567cbb17c8abe/scipy-1.2.1-cp27-cp27mu-manylinux1_x86_64.whl (24.8MB)

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Collecting python-dateutil (from NanoPlot>=0.20.1->nanopack)

  Downloading https://files.pythonhosted.org/packages/41/17/c62faccbfbd163c7f57f3844689e3a78bae1f403648a6afb1d0866d87fbb/python_dateutil-2.8.0-py2.py3-none-any.whl (226kB)

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Collecting seaborn (from NanoPlot>=0.20.1->nanopack)

  Downloading https://files.pythonhosted.org/packages/7a/bf/04cfcfc9616cedd4b5dd24dfc40395965ea9f50c1db0d3f3e52b050f74a5/seaborn-0.9.0.tar.gz (198kB)

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Collecting mappy>=2.2 (from NanoLyse>=0.2.1->nanopack)

  Downloading https://files.pythonhosted.org/packages/0d/66/8e1170f36283f45743e3e6e923a513e2386d5df93e935daba27e7e0d2ad6/mappy-2.15.tar.gz (195kB)

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Collecting matplotlib>=2.0.0 (from nanoplotter>=0.16.5->nanopack)

  Downloading https://files.pythonhosted.org/packages/59/08/04933377dc4500e3698e93f9113dc3624874e0914f4c85767ecb5b389084/matplotlib-2.2.3-cp27-cp27mu-manylinux1_x86_64.whl (12.6MB)

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Collecting pauvre (from nanoplotter>=0.16.5->nanopack)

  Downloading https://files.pythonhosted.org/packages/f0/70/b1a2c106128156d2f234964caee3f900733f81b67df51ffa62591e5bba46/pauvre-0.1.86.tar.gz (40kB)

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Collecting pytz>=2011k (from pandas->NanoPlot>=0.20.1->nanopack)

  Downloading https://files.pythonhosted.org/packages/61/28/1d3920e4d1d50b19bc5d24398a7cd85cc7b9a75a490570d5a30c57622d34/pytz-2018.9-py2.py3-none-any.whl (510kB)

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Collecting six>=1.5 (from python-dateutil->NanoPlot>=0.20.1->nanopack)

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Collecting cycler>=0.10 (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Downloading https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl

Collecting backports.functools-lru-cache (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Downloading https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl

Collecting subprocess32 (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Downloading https://files.pythonhosted.org/packages/be/2b/beeba583e9877e64db10b52a96915afc0feabf7144dcbf2a0d0ea68bf73d/subprocess32-3.5.3.tar.gz (96kB)

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Collecting kiwisolver>=1.0.1 (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Downloading https://files.pythonhosted.org/packages/3a/62/a8c9bef3059d55ab38e41fe9cba4fad773bfc04e47290bab84db1c18262e/kiwisolver-1.0.1-cp27-cp27mu-manylinux1_x86_64.whl (951kB)

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Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Downloading https://files.pythonhosted.org/packages/de/0a/001be530836743d8be6c2d85069f46fecf84ac6c18c7f5fb8125ee11d854/pyparsing-2.3.1-py2.py3-none-any.whl (61kB)

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Collecting setuptools (from kiwisolver>=1.0.1->matplotlib>=2.0.0->nanoplotter>=0.16.5->nanopack)

  Downloading https://files.pythonhosted.org/packages/d1/6a/4b2fcefd2ea0868810e92d519dacac1ddc64a2e53ba9e3422c3b62b378a6/setuptools-40.8.0-py2.py3-none-any.whl (575kB)

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Installing collected packages: numpy, biopython, pysam, pytz, six, python-dateutil, pandas, scipy, cycler, backports.functools-lru-cache, subprocess32, setuptools, kiwisolver, pyparsing, matplotlib, seaborn, pauvre, nanoplotter, nanomath, nanoget, NanoPlot, NanoStat, NanoFilt, mappy, NanoLyse, nanopack

  Running setup.py install for subprocess32 ... done

  Running setup.py install for seaborn ... done

  Running setup.py install for pauvre ... done

  Running setup.py install for nanoplotter ... done

  Running setup.py install for nanomath ... done

  Running setup.py install for nanoget ... done

  Running setup.py install for NanoPlot ... done

  Running setup.py install for NanoStat ... done

  Running setup.py install for NanoFilt ... done

  Running setup.py install for mappy ... done

  Running setup.py install for NanoLyse ... done

  Running setup.py install for nanopack ... done

Successfully installed NanoFilt-2.0.0 NanoLyse-0.5.0 NanoPlot-1.8.1 NanoStat-0.8.0 backports.functools-lru-cache-1.5 biopython-1.73 cycler-0.10.0 kiwisolver-1.0.1 mappy-2.15 matplotlib-2.2.3 nanoget-1.2.0 nanomath-0.15.1 nanopack-0.1.4 nanoplotter-0.28.0 numpy-1.16.1 pandas-0.24.1 pauvre-0.1.86 pyparsing-2.3.1 pysam-0.15.2 python-dateutil-2.8.0 pytz-2018.9 scipy-1.2.1 seaborn-0.9.0 setuptools-40.8.0 six-1.12.0 subprocess32-3.5.3


$ pip list | grep NanoPlot

NanoPlot (1.8.1)


$ sudo pip install nanopack

[sudo] password for user:

The directory '/home/user/.cache/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.

The directory '/home/user/.cache/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.

Requirement already satisfied: nanopack in /home/user/.local/lib/python2.7/site-packages

Requirement already satisfied: NanoPlot>=0.20.1 in /home/user/.local/lib/python2.7/site-packages (from nanopack)

Requirement already satisfied: NanoStat>=0.6.1 in /home/user/.local/lib/python2.7/site-packages (from nanopack)

Requirement already satisfied: NanoFilt>=1.5.2 in /home/user/.local/lib/python2.7/site-packages (from nanopack)

Requirement already satisfied: NanoLyse>=0.2.1 in /home/user/.local/lib/python2.7/site-packages (from nanopack)


Added the path in bashrc


Still no luck!



Tried this:


$ pip3 install nanopack


Collecting nanopack

  Downloading https://files.pythonhosted.org/packages/54/24/f5b5a96a6a32d1127eb547745ab9572286035058f60a2988bdd2b1673bd7/nanopack-1.0.0.tar.gz

Collecting NanoComp>=0.4.0 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/75/4f/9e8f5c304d1644ab0892e35de294188d99aa8eb3df351d19c199b51f3ae6/NanoComp-1.4.0.tar.gz

Collecting NanoFilt>=1.5.2 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/dc/4a/dacdbbd28973d2d56ad0c0f3bf578f2bdfb68c9d27d7828034ea05cc90bc/NanoFilt-2.2.0.tar.gz

Collecting NanoGUI (from nanopack)

  Downloading https://files.pythonhosted.org/packages/bd/a1/6cf74f2086e4e7215c740c28671337f01d126e9d2f4ec6ebacc47fd792de/NanoGUI-0.1.0.tar.gz

Collecting NanoLyse>=0.2.1 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/e9/52/812e19f50576871e82c0f5e8f188f4a7de99199fe1ceb50c33ac353de408/NanoLyse-1.1.0.tar.gz

Collecting NanoPlot>=0.20.1 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/f2/79/849cda1c7a6a124ccbf9e81d4c2e61ec6d780a841f4b6bb04aa942b47fcc/NanoPlot-1.21.0.tar.gz

Collecting NanoStat>=0.6.1 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/9c/8e/3fd581ebe737d1bf6716e5e8731f6677a84ab71bb0291b0cf8f1a9c6b656/NanoStat-1.1.2.tar.gz

Collecting nanoget>=0.15.0 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/2e/97/f439c3cdb85d99288091b1224460d6b6245ceaa962286744e89006b95aa8/nanoget-1.7.7.tar.gz

Collecting nanomath>=0.13.3 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/19/0b/2cdf6f70b6b7e581b7149b60f9117841326186d44aa62f60ed18280f7515/nanomath-0.22.0.tar.gz

Collecting nanoplotter>=0.16.5 (from nanopack)

  Downloading https://files.pythonhosted.org/packages/0c/85/86e0323e7448c3c96b7cb17cd41c1e99c80336380cdb77b48debbb82772b/nanoplotter-1.3.1.tar.gz

Collecting numpy (from NanoComp>=0.4.0->nanopack)

  Downloading https://files.pythonhosted.org/packages/f5/bf/4981bcbee43934f0adb8f764a1e70ab0ee5a448f6505bd04a87a2fda2a8b/numpy-1.16.1-cp36-cp36m-manylinux1_x86_64.whl (17.3MB)

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Collecting pandas (from NanoComp>=0.4.0->nanopack)

  Downloading https://files.pythonhosted.org/packages/e6/de/a0d3defd8f338eaf53ef716e40ef6d6c277c35d50e09b586e170169cdf0d/pandas-0.24.1-cp36-cp36m-manylinux1_x86_64.whl (10.1MB)

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Collecting psutil (from NanoComp>=0.4.0->nanopack)

  Downloading https://files.pythonhosted.org/packages/c7/01/7c30b247cdc5ba29623faa5c8cf1f1bbf7e041783c340414b0ed7e067c64/psutil-5.5.1.tar.gz (426kB)

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Collecting biopython (from NanoFilt>=1.5.2->nanopack)

  Downloading https://files.pythonhosted.org/packages/28/15/8ac646ff24cfa2588b4d5e5ea51e8d13f3d35806bd9498fbf40ef79026fd/biopython-1.73-cp36-cp36m-manylinux1_x86_64.whl (2.2MB)

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Collecting mappy>=2.2 (from NanoLyse>=0.2.1->nanopack)

  Using cached https://files.pythonhosted.org/packages/0d/66/8e1170f36283f45743e3e6e923a513e2386d5df93e935daba27e7e0d2ad6/mappy-2.15.tar.gz

Collecting pysam>0.10.0.0 (from NanoPlot>=0.20.1->nanopack)

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Building wheels for collected packages: nanopack, NanoComp, NanoFilt, NanoGUI, NanoLyse, NanoPlot, NanoStat, nanoget, nanomath, nanoplotter, psutil, mappy, pauvre, retrying, pyrsistent

  Running setup.py bdist_wheel for nanopack ... done

  Stored in directory: /home/user/.cache/pip/wheels/03/38/47/12ff3f64dcef32f2a9fcd92e57c3fdf8fb8953db45e083a806

  Running setup.py bdist_wheel for NanoComp ... done

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  Running setup.py bdist_wheel for NanoFilt ... done

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  Running setup.py bdist_wheel for NanoGUI ... done

  Stored in directory: /home/user/.cache/pip/wheels/43/da/4a/2e2d1f57a5ad2eacaac123f036096c2be9ce4a996e94551fc4

  Running setup.py bdist_wheel for NanoLyse ... done

  Stored in directory: /home/user/.cache/pip/wheels/68/6d/64/27b22d72fac5d81ed03f70d98c141ce056fdada3d1860132cb

  Running setup.py bdist_wheel for NanoPlot ... done

  Stored in directory: /home/user/.cache/pip/wheels/1b/5b/3e/6c83f4fed51f3960855fad667a1010be1086edcc023207a679

  Running setup.py bdist_wheel for NanoStat ... done

  Stored in directory: /home/user/.cache/pip/wheels/ad/ab/b1/55c9bf3e44f4229d21815a72c729bfa0ddfb502a32a060a9f7

  Running setup.py bdist_wheel for nanoget ... done

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  Running setup.py bdist_wheel for nanomath ... done

  Stored in directory: /home/user/.cache/pip/wheels/64/7a/53/59b333f92366f22359fda6aab46098068b42372508748f6173

  Running setup.py bdist_wheel for nanoplotter ... done

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  Running setup.py bdist_wheel for psutil ... done

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  Running setup.py bdist_wheel for mappy ... done

  Stored in directory: /home/user/.cache/pip/wheels/16/61/f2/3ab933f528809270525fdf5b4f85d633b9212082a1d120fbd2

  Running setup.py bdist_wheel for pauvre ... done

  Stored in directory: /home/user/.cache/pip/wheels/6e/2b/00/0e4d27ead78a742a19bc4705a54bdcaae9cc456974b234bfad

  Running setup.py bdist_wheel for retrying ... done

  Stored in directory: /home/user/.cache/pip/wheels/d7/a9/33/acc7b709e2a35caa7d4cae442f6fe6fbf2c43f80823d46460c

  Running setup.py bdist_wheel for pyrsistent ... done

  Stored in directory: /home/user/.cache/pip/wheels/83/59/9a/a037b9b3c3e93d9275ea0aff9d6064400f372879dfdab01afe

Successfully built nanopack NanoComp NanoFilt NanoGUI NanoLyse NanoPlot NanoStat nanoget nanomath nanoplotter psutil mappy pauvre retrying pyrsistent

Installing collected packages: numpy, biopython, pytz, six, python-dateutil, pandas, nanomath, pysam, nanoget, pyparsing, setuptools, kiwisolver, cycler, matplotlib, scipy, pauvre, decorator, retrying, chardet, idna, certifi, urllib3, requests, ipython-genutils, pyrsistent, attrs, jsonschema, traitlets, jupyter-core, nbformat, plotly, seaborn, patsy, statsmodels, nanoplotter, NanoPlot, psutil, NanoComp, NanoFilt, NanoGUI, mappy, NanoLyse, NanoStat, nanopack

Successfully installed NanoComp-1.4.0 NanoFilt-2.2.0 NanoGUI-0.1.0 NanoLyse-1.1.0 NanoPlot-1.21.0 NanoStat-1.1.2 attrs-18.2.0 biopython-1.73 certifi-2018.11.29 chardet-3.0.4 cycler-0.10.0 decorator-4.3.2 idna-2.8 ipython-genutils-0.2.0 jsonschema-3.0.0 jupyter-core-4.4.0 kiwisolver-1.0.1 mappy-2.15 matplotlib-3.0.2 nanoget-1.7.7 nanomath-0.22.0 nanopack-1.0.0 nanoplotter-1.3.1 nbformat-4.4.0 numpy-1.16.1 pandas-0.24.1 patsy-0.5.1 pauvre-0.1.86 plotly-3.6.1 psutil-5.5.1 pyparsing-2.3.1 pyrsistent-0.14.11 pysam-0.15.2 python-dateutil-2.8.0 pytz-2018.9 requests-2.21.0 retrying-1.3.3 scipy-1.2.1 seaborn-0.9.0 setuptools-40.8.0 six-1.12.0 statsmodels-0.9.0 traitlets-4.3.2 urllib3-1.24.1


This worked!!



$ NanoComp -h

usage: NanoComp [-h] [-v] [-t THREADS] [-o OUTDIR] [-p PREFIX] [--verbose]

                [--raw] [--readtype {1D,2D,1D2}] [--maxlength N]

                [--minlength N] [--barcoded] [--split_runs TSV_FILE]

                [-f {eps,jpeg,jpg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff}]

                [-n names [names ...]] [-c colors [colors ...]]

                [--plot {violin,box,false}] [--title TITLE] [--dpi DPI]

                (--fasta file [file ...] | --fastq files [files ...] | --summary files [files ...] | --bam files [files ...])


Compares long read sequencing datasets.